小中大 说明:在写论文时,作为初稿,可用XP的VIEW/W 命令在屏幕上显示图后,用拷屏方法先嵌于文中。作为正式稿,则采用其它方式插入图。常用方法有四:一是将图打印出来,指令为XP下的DRAW ELL50 (ELL50为PLT文件),后扫描成TIFF文件;二是XP下的DRAW ELL50.PLT文件转为HPL文件,后在WINGX下转化为PS文件,再用PHOTOSHOP转化为JEG或TIFF文件;三是XP下的DRAW ELL50.PLT文件转为eps文件(选A),后用PHOTOSHOP打开,并转化为JEG或TIFF文件;四是直接在DIAMOND下直接作图,并将图拷贝到PHOTOSHOP转化为图形文件。四种方法各有优缺点,我们提倡第三种方法。第四种方法的最大优点是图像艳丽(也可设置成黑白图),适于画多面体图和制作幻灯片,但其指令较多,且文件非常庞大,在计算机存储空间足够大时是很好的一种方法。(一般稿件要求提供TIFF图或EP图,晶体学期刊要求提供HPL图)
aaa.ins文件的格式(常用)
TITL title up to 76 characters
wavelength in Å and unit cell in ÅCELL & degree
Z(number of molecule = unite-content/molecule-formula), cellZERR esd's
lattice typeLATT
symmetry operatorsSYMM
to defineSFAC scattering factor numbers
unit cell contents in the sameUNIT order
crystal dimensions, e.g. SIZE 0.61 0.039SIZE 0.023
temperature, e.g. temp 22TEMP
n cycles full-matrixL.S. n least-squares
CIF-output, bonds, Fourier peak searchACTA
toOMIT h k l suppress bad reflections
including H(/ or non-H) in bongBOND $H(/0.5) lengths/angles tables
all torsion angles except involving HCONF
EQIV $1 symmetry operation-x+1, -y+1, -z
H-bonds will be listed in the LSTHTAB file
(a is the acceptor, d is the donor. This command can codeHTAB a d H-bonds into the CIF file.)
(7 for rotating model, 3 forHFIX m7 or m3 riding model, and m see 'help HADD')
to join atoms a and bBIND a b
RTAB to list the distance of H and D (e. g., RTAB H..D H1 O2_$1)H..D
RTAB to list the angle of H bonding (e. g., RTAB AHD N1 H1 O2_$1)AHD
MPLA n to list the derivation of plan(atom1 atom2 …<0.03Å basic plane, <0.07 near plane, >0.07Å out of plane)
Fo-Fc Fourier (when nFMAP n<0, hole peaks will also be found)
no. of peak listPLAN n
to refine anEXTI isotropic extinction parameter
to calculate the solvent effectSWAT
ANIS to convert n atoms from isotropically to anisotropicallyn
weightingWGHT shceme
over scale and free for U(H). When partial occupancy, it will beFVAR more than 2 values.
Atom name , SFAC number x y z, U(iso) or Uij. The progam automatically generates special position constraints.
(seeAFIX mn HFIX)
AFIX 0
to read h,k,l Fo^2,sigma(Fo^2) from .hkl dataHKLF 4 file
END
详细的说明可参阅SHELXL97说明书或陈小明编著的《单晶结构分析》
Diamond
1. FILE: Open a INS or CIF file for a structure.
2. Open EDIT=>ATOMIC PARMETERS to delete some kind of atoms, which will be not appeared in the figure(s).
3. Open EDIT=>BOND TYPES to define the bond lengths, if necessary.
4. Open EDIT=>ATOM TYPES to define the atom colors, if necessary.
5. Create single atoms from parameter list.
or “Ctrl+Shift+A” or from STRUCTURE=>ADD ALL ATOMS
6. Fill coordination spheres around the selected atoms and show the bonds
or “Ctrl+Shift+S” or from STRUCTURE=>COORDINATION SPHERES
Some new atoms will be generated.
7. Complete the fragments to molecules. or “Ctrl+Shift+F”. The dimensions will be exhibited.
Please Add the Following Items in CIF
_chemical_formula_moiety 'Mo3 O10, C3 H12 N2'
(also obtained from PLATON VALIDATE in WinGX)
_symmetry_cell_setting 'Orthorhombic'
_symmetry_space_group_name_H-M 'Pna2(1)' (also obtained from P4P or PCF file)
_cell_measurement_reflns_used 7304
_cell_measurement_theta_min 2.36
_cell_measurement_theta_max 28.44 (also obtained from P4P or PCF file)
_exptl_crystal_description needle
_exptl_crystal_colour colourless (add by yourself)
_exptl_crystal_size_max 0.12
_exptl_crystal_size_mid 0.10
_exptl_crystal_size_min 0.08
(add as SIZE in INS file is appreciated, also obtained from P4P or PCF file)
_exptl_absorpt_correction_type multi-scan
_exptl_absorpt_process_details sadabs
(add by yourself, also obtained from P4P or PCF file or other file)
_exptl_absorpt_correction_T_min 0.6918
_exptl_absorpt_correction_T_max 0.7774
(autogenerated when SIZE in INS file, otherwise, add from IUCR validate)
_exptl_special_details ‘crystal coated in epoxy glue’ (add by yourself)
_diffrn_measurement_device_type 'CCD area detector'
_diffrn_measurement_method 'phi and omega scans' (also obtained from P4P or PCF file)
_diffrn_reflns_av_R_equivalents 0.0227 (autogenerated, or add by yourself when corrections made)
_computing_data_collection 'Bruker SMART'
_computing_cell_refinement 'Bruker SMART'
_computing_data_reduction 'Bruker SAINT' (also obtained from P4P or PCF file)
_computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)'
_computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' (autogenerated)
_computing_molecular_graphics 'Bruker SHELXTL'
_computing_publication_material 'Bruker SHELXTL' (also obtained from P4P or PCF file)