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标题:【求助】RT-PCR凝胶成像照片结果分析

蒲公英[使用道具]
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【求助】RT-PCR凝胶成像照片结果分析

我用半定量RT-PCR法分析癌基因表达情况,现在分别得到扩增后的癌组织和癌旁组织电泳凝胶成像照片,包括marker、b-actin和目的基因的条带,请教各位高手几个问题:
1.如何根据图像分析差异的显著性?
2.是否存在用于分析凝胶成像照片的软件?
3.那一种软件有权威性?
请各位不吝指教!
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october7[使用道具]
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一般是以目的片段的吸光度值与B-ACTINE吸光度值的比值为最后结果进行比较。N/B-ACTINE与T/B-ACTINE的比值>1或 <0.5就为有差异。然后对所有的样本进行统计学分析,确定差异有无显著性。普通的凝胶成像系统都有自带软件,可进行上述工作。若无VDS成像系统,可先将图象扫描到PC上,再通过其他软件进行(我自己用的BANDLEADER3。0就不错,需要的话说一声,可以E-MAIL 过去。)
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xevin[使用道具]
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你好,我也是在做RT-PCR,是个新手,对此太不了解,听了你的解释,很有启发,但是也有些疑问:
1、N/B-和T/B是什么意思啊?
2、“将图象扫描到PC上”的图象是电泳后的凝胶图象吗?扫描时直接把胶放到扫描仪上吗?哪面朝上啊?
3、统计学分析一般用什么方法分析?
BANDLEADER3我也很需要,能给我一份吗? jkl305@163.com
不好意思,再次感谢
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蒲公英[使用道具]
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十分感楼上朋友的热心帮助,我已经下载到BANDLEADER3.0,但是打不开我的任何图形文件,这个软件的大小是496k。
如果朋友方便的话,请将你的软件寄给我,我做一下对比:xczhang@yeah.net
不胜感激!
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zhenxin[使用道具]
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Bandleader好像不是最好的。
简单的话,Quantiscan2.1, BandScan,都可以。
大而功能全的,GelPro4, IPP, Quantity_One, 还有一些,名字极不起来了。
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zhenxin[使用道具]
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推荐使用QuantiScan,
这是其主页上的介绍。下载到处都有,谈杰和hoyoyo上的都有。
**,hoyoyo上有。我放了一个到yahoo公文包,具体说明在bioon上。
QuantiScan has similar functionality to sophisticated densitometers but at a fraction of the cost. It is able to analyze a wide variety of material including polyacrylamide and agarose gels, autoradiograms, TLC plates, etc. The program will accept images for analysis directly from any TWAIN compliant scanner as well as most uncompressed .TIF or .BMP files. For laned gels of reasonable quality, the analysis is highly automated allowing extremely high throughput of data. Almost any image can be analyzed with the manual modes of QuantiScan.
Images can be preprocessed by rotation, horizontal or vertical flip, cropping to remove background and inversion or re-calibration of grayscale. Also, during the preprocessing stage, there is an option to calibrate lanes for a known standard solution which allows automatic calculation of mol. wts of unknowns. In addition, if lanes on gels are known to be precisely spaced, there is a facility to simply specify their total number and whether they are to be measured one or two-dimensionally.
For lane analysis, lanes of any width can also be created manually or by using the unique automatic lane drawing mode. This detects the edges of each lane and thus allows for irregular spacing and width. Lanes can be skewed to allow for gel imperfections. Lanes can also be copied and the copies moved with the mouse or cursor keys. Once lanes have been drawn, a graph of density versus position is automatically produced. If background subtraction has been opted for, the graph also displays this. Background subtraction methods include: Minimum, Interpolated Minimum, Valley, Edge and Polynomial. The density level of user-selected areas of images can also be displayed as 3-D density maps which can be printed, saved or copied to the clipboard.
Densitometric peaks for each lane can be specified manually or automatically with the sophisticated peak search routine. Optionally, each peak can be labelled on the graph to make lane comparisons easier. Where appropriate, automatic fitting of Gaussian peaks can also be performed. This automatic fitting uses a least-squares minimization technique to fit a sequence of peaks and a polynomial background to the given profile. Peak areas are calculated by integration using Simpson's rule and, if the automatic fitting option has been used, the area of the fitted peak is also calculated and displayed.
As well as the calibration to a known standard solution, mentioned above, there is the ability to manually select standard peaks on the densitometry graph and calibrate their mol. wts or other units to their position on the X-axis with a variety of models including linear, logarithmic and exponential. When this has been done, the table of results automatically displays the fitted values of the standard and test peaks. Reports are also generated for the other peak parameters, including position, height, width, background and net area. Together with the graphical results, these can be printed, saved to disk or copied to the clipboard for transfer to other programs. A facility is available to select one lane on a gel as a standard and this can then be compared with other lanes by superimposing the graphs and presenting results for the standard lane alongside each test lane. The parameters of the standard lane can also be saved in a file and recalled for comparisons between different images.
QuantiScan also offers a separate mode to analyze discrete blots. The blots can be detected automatically or specified manually by creating a rectangle around each with the mouse. Any rectangle can be duplicated and the copy moved over another blot with the mouse or cursor keys to ensure that the area of background remains constant. Blot number, position, height, area and densitometric volume are automatically reported. Background subtraction is optional. Numeric, graphical and image output can be printed as reports and can also be saved as files or copied to the clipboard for easy transfer to other programs. Calibration can be done automatically in this mode, using standard solutions. In the case of blots, it is densitometric volume which is the basis of calibration, enabling use of solutions of known concentration as standards for assay purposes.
QuantiScan is compatible with any version of Windows from 3.1 onwards.


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2016-2-9 20:58
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蒲公英[使用道具]
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我昨天下载了Totallab,还没有研究使用方法。
我想请问一下是什么网站?地址在哪里?
不胜感激!
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xevin[使用道具]
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我知道hoyoyo 的网页,地址如下:
cuturl('http://www.biolover.com')
很不错的网页。上面有好多分子生物学分析软件。不知道它的存在,真是有点遗撼。呵呵。
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蒲公英[使用道具]
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我试用了一下totallab,感觉这个软件不错,用处很多,我用来分析我的结果感觉上手很快,操作简便。建议大家试用一下。
在cuturl('http://www.bio-soft.net/')有下载。
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cbou876[使用道具]
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BANDLEADER3。0的大小应为980K,已寄出,请查收。
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