生物化学资源 Biochemistry
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蛋白质数据库银行(Protein DataBases)
cuturl('http://pdb.pdb.bnl.gov/')
这里提供实验性的Gopher服务,包括便利实用的方法,多彩的图形及一些分析信息。
国际核酸序列数据库(DDBJ/EMBL/GENBANK)
cuturl('http://www.im.ac.cn/sdinfo/guojihezuo.html')
国际核酸序列数据库(DDBJ/EMBL/GENBANK)是目前国际上最大的核酸序列数据库,它由美国国家生物技术信息中心NCBI、欧洲分子生物学实验室、日本国立遗传学研究所共同制作。
亿兆莲加 (E-zhao(dot)com)
cuturl('http://e-zhao.com/')
致力于搜集生物化学网络资源,现已达到九大类二百三十余条连结。
SWISSPRO (瑞士蛋白质序列数据库)
cuturl('gopher://gopher.nih.gov/77/gopherlib/index/swiss/index')
可通过输入关键词查找有关信息
布鲁克海文蛋白质数据库PDB
cuturl('http://www.pdb.bnl.gov/')
它是生物大分子的三维结构数据库,包括原子坐标,文献出处,一级序列和二级序列结构信息,晶体结构因子及其D-NMR实验数据,涉及的大分子包括蛋白质,DNA,RNA,病毒,碳水化合物.
分子生物载体序列数据库 Molecular Biology Vector Sequence Database.
Information for more than 2600 vectors is available with search facilities.
cuturl('http://vectordb.atcg.com/')
核苷酸序列数据库(GENBANK)提供查询检索
cuturl('http://www2.ncbi.nlm.nih.gov/genbank/query_form.html')
核酸数据库 Nucleic Acid Database(ND
cuturl('gopher://ndbgopher.rutgers.edu:17105/11/')
需要验明生份。
生物分子学、生物基因顺序库(哈佛大学)
cuturl('http://golgi.harvard.edu/sequences.html')
List of On-line and Email Molecular Biology Services.Pedro's Research Tools (Molecular Biology Software Guide) .The World Wide Web Virtual Librarysubset
免费生化软件天地 <中文简体(G> 生物化学专业站点。
cuturl('http://golgi.harvard.edu/sequences.html')
生物化学分子生物学软件下载区 <中文简体(G>
cuturl('http://biochemsoft.yeah.net/')
提供生物、化学、生物化学、分子生物学软件下载。作者: ztonyc 时间: 2014-3-26 17:27
祥瑞莲加
cuturl('http://ledger.163.net/')
生物化学 分子生物学 生物教学软件 感情 免费邮件 免费 电子贺卡 贺卡 unix *** 电脑 计算机 免费主页
"百兽"生化索引---祥瑞莲加世界
cuturl('http://siriga.topcool.net/')
biochemist biology 生物化学 分子生物学 动物学 植物学 生物数据库 数据库 生物 免费 网页制作 bbs 聊天
Biochemist On-line [ENG]
cuturl('http://www.biochemist.com/')
在线生物化学家,有求职、论坛、数据、资源搜索等内容
Biochemistry Easy Search Tool
cuturl('http://www.worthington-biochem.com:8080/')
This resource indexes websites related to biochemistry,the index is constructed automatically with a robot .Most of the pages are from academic institutions around the world.
Biochemist.com
cuturl('http://www.biochemist.com/main.htm')
Resource for biochemists. Includes a message board, a chat room, job listings, and links to databases, journals, and other related sites.
Biochemistry
cuturl('http://pubs.acs.org/journals/biochem.html')
American Chemical Society
Weekly journal of research in chemistry, biochemistry, and molecular biology.
Biochemistry, Biophysics, and Molecular Biology
cuturl('http://golgi.harvard.edu/biopages/biochem.html')
Harvard University
Virtual Library index of biochemistry, biophysics, and molecular biology related sites. Includes an alphabetical list of publications, databases, academic and research groups, and other organizations.
Biomaterials
cuturl('http://www.elsevier.nl/inca/publications/store/3/0/3/9/2/index.htt')
Elsevier Science
International journal on the science and application of biomaterials and associated medical devices. Includes BIOSIS, ADONIS, BECI, and bibliographic information.
Internet Journal of Science - Biological Chemistry
cuturl('http://www.netsci-journal.com/')
Peer-reviewed journal of biochemistry. Offers research articles, abstracts, software reviews, and related news. Past issues are fully archived.
The Journal of Biological Chemistry Online
cuturl('http://highwire.stanford.edu/')
The Journal of Biological Chemistry Online is co-published with Stanford University's HighWire Press
NetBiochem
cuturl('http://www.auhs.edu/netbiochem/')
Resource for medical biochemistry. Provides discussions of biochemical topics, and contains tables and graphics on metabolism.作者: DONT 时间: 2014-3-26 17:28
The Life Science Home Pagerotocols and Reagent Resources
cuturl('http://sciweb.com/features/protocols.cfm')
Biology Links :Biochemistry and Molecular Biology
cuturl('http://www.mcb.harvard.edu/BioLinks/biochem.html')
Biology scientists buyers guide
cuturl('http://www.biocompare.com/revarch.asp')
BIochemistry course with live pictures
cuturl('http://departments.oxy.edu/biology/Franck/Bio222/bio222mainpage.htm')
Molecular Biology Protocols
cuturl('http://micro.nwfsc.noaa.gov/protocols/')作者: bring 时间: 2014-3-26 17:28
Biochemical Engineering Journal 《生物化学工程杂志》 0.566
cuturl('http://www.sciencedirect.com/science/journal/1369703X')
Biochemical and Biophysical Research Communications
《生物化学与生物物理学研究通讯》 3.055
cuturl('http://www.sciencedirect.com/science/journal/0006291X')
Biochemical and Molecular Medicine
cuturl('http://www.sciencedirect.com/science/journal/10773150')
Biochemical Education 0.232
cuturl('http://www.sciencedirect.com/science/journal/03074412')
Biochemical Pharmacology 《生化药理学》2.447
cuturl('http://www.sciencedirect.com/science/journal/00062952')
Journal of Biochemical and Biophysical Methods 0.817
cuturl('http://www.sciencedirect.com/science/journal/0165022X')
Journal of Biochemical and Molecular Toxicology 1.830
cuturl('http://www.trdrp.org/research/PagePeriodical.asp?periodical_id=736')
Molecular and Biochemical Parasitology 1.14
cuturl('http://www.sciencedirect.com/science/journal/01666851')
Physiological and biochemical zoology 1.538
cuturl('http://www.journals.uchicago.edu/PBZ/home.html')
American Journal of Respiratory Cell and Molecular Biology 3.997
cuturl('http://www.ajrcmb.org/')
Annual Review of Plant Physiology and Plant Molecular Biology 19
cuturl('http://www.library.soton.ac.uk/info/journals/10223.shtml')
Biochemistry and Molecular Biology Education
cuturl('http://www.sciencedirect.com/science/journal/14708175')
Cellular and Molecular Life Sciences
cuturl('http://link.springer.de/link/service/journals/00018/tocs.htm')
Cellular and Molecular Neurobiology 1.6
cuturl('http://www.kluweronline.com/issn/0272-4340/contents')
Critical reviews in biochemistry and molecular biology 6.391
cuturl('http://www.sciencedirect.com/science/journal/10409238')
Human Molecular Genetics 5.273
cuturl('http://hmg.oupjournals.org/')
Insect Biochemistry and Molecular Biology 1.694
cuturl('http://www.sciencedirect.com/science/journal/09651748')
Molecular and Cellular Biochemistry 2.054
cuturl('http://www.kluweronline.com/issn/0300-8177/contents')
Molecular Cell Biology Research Communications 3.055
cuturl('http://www.sciencedirect.com/science/journal/15224724')
Molecular membrane biology 5.142
cuturl('http://www.mpibp-frankfurt.mpg.de/molecularmembranebiology/')
Nature Reviews Molecular Cell Biology 17.927
cuturl('http://www.nature.com/nrm/')
Plant Molecular Biology
cuturl('http://www.kluweronline.com/issn/0167-4412/contents')
Plant Molecular Biology reporter
cuturl('http://pubs.nrc-cnrc.gc.ca/ispmb/reporter.html')
Reviews in Molecular Biotechnology
cuturl('http://www.sciencedirect.com/science/journal/13890352')作者: youyou99 时间: 2014-3-26 17:33
核酸数据库
◎ BioSCAN - 生物学序列比较分析Biological Sequence Comparative Analysis at U. North Caroline W3
◎ BMCD - 生物大分子数据库Biological Macromolecule Crystallization Database at CARB
◎ Codon Usage -基因序列中不同ORF分析 Analysis of Different ORFs in a Gene Sequence at U. Minnesota W3
◎ CpGIsle - CpG 数据库CpG Islands Database at BEN, Belgium W3
◎ Darwin - 核酸多肽数据分析和修复Data Analysis and Retrieval With Indexed Nucleotide/Peptide Sequences at ETH-Zürich, Switzerland W3
◎ dbEST - 表达序列标志数据库Database of Expressed Sequence Tags at NCBI W3
◎ DBGET - 完整的数据库修复系统Integrated Database Retrieval System (w/ diagram links) at GenomeNet, Japan W3
◎ DDBJ - 日本DNA的数据库DNA Database of Japan at National Institute of Genetics, Japan Gopher
◎ Dot Plot -DNA序列的内部比较Compare a DNA Sequence with Itself at U. Minnesota W3
◎ DrugBank - 三维药物结构数据库Three-dimensional Drug Structure Databank at NIH W3
◎ EC Enzyme at Johns Hopkins and EC Number Table at GenomeNet, Japan and GenoBase Enzyme Index at NIH W3
◎ ECDC - 大肠杆菌数据库E. coli Database Collection at Uni-Gießen, Germany W3
◎ EMBL - 核酸序列数据库Nucleotide Sequence Database and EMBL-New Entries at EMBnet-Basel Gopher
◎ EMNEW - 新核酸序列检索Index of New EMBL Sequences at EBI, UK W3
◎ EMP Compound and EMP Pathways - 酶及代谢途径数据库Selkov Enzyme and Metabolic Pathway (EMP) Database at NIH W3
◎ EMP Metabolic Pathways - 代谢途径指南Navigation in Metabolic Pathways from MCS-Computational Biology at Argonne National Laboratory W3
◎ ENZYME -酶数据库 The Enzyme Data Bank at ExPASy, Switzerland W3
◎ Enzyme Structures Database -酶结构 Structures of Enzymes Deposited in the PDB at UCL-London, UK W3
◎ EPD - 真核启动子数据库Eucaryotic Promoter Database at EMBL-Heidelberg, Germany and EPD at GenomeNet, Japan W3
◎ EPO - 欧洲专利局核酸数据库European Patent Office Nucleotide Database at BiO/U. Oslo, Norway W3 and EPO at CSC, Finland Gopher
◎ FASTA - 核酸序列的数据库比较查寻Compare a Nucleic Acid Sequence to Nucleotide Sequence Databases (w/ updates) at EBI, UK, FASTA (Berlin, Vectorbank, etc) at Stanford U., FASTA at EERIE-Nimes, France and FASTA at CRIHAN, France W3
◎ FASTPAT - FASTA模型数据库检索FASTA-based Pattern Database Search (see Documentation) at Baylor College of Medicine W3
◎ FlyBase -果蝇的基因库 Genetic and Molecular Database for Drosophila at Harvard U. W3
◎ GDB - 人类基因组数据库Human Genome Data Base at Johns Hopkins W3
◎ GenBank Database 基因银行(+Updates) at NCBI and GenBank-Fetch at Washington U. W3
◎ Gene Finder - 预测基因结构、内含子、外显子Predict Gene Structure, Internal Exons and Splicing Sites in DNA and Exon-Exon Junstion in cDNA at Baylor College of Medicine W3
◎ GenLang - 查找核算序列中的基因和高级结构Find Genes and Other Higher-Order Features in Nucleotide Sequences at CBIL-U. Pennsylvania W3
◎ GenoBase at NIH W3作者: youyou99 时间: 2014-3-26 17:40
◎ Genome Databases and Genome Centers -基因组数据中心环球网联结点 World Wide Links at EERIE-Nimes, France W3
◎ Genome Workstation - 遗传组相关联结 Genome Related Links at Roslin Institute, UK W3
◎ Genomic Maps -基因组特别资源联结 Links to Genome Specific Resources at Biotech-Indiana W3
◎ Grail - DNA序列翻译分析Analysis of the Protein Coding Potential of a DNA Sequence (see Documentation) at ORNL W3
◎ GSDB - 基因组序列数据库Genome Sequence Database at NCGR W3
◎ GuessProt - 选择特定等电点和分子量的蛋白质Selects SwissProt proteins given pI and Mw at ExPASy, Switzerland W3
◎ HHS - SwissProt 和PDB序列系统分类数据库SwissProt and PDB Systematic Sequence Classification Database at Washington U. W3
◎ HOVERGEN - 同源脊椎动物基因数据库Database of Homologous Vertebrate Genes at CAOS/CAMM, The Netherlands W3
◎ Klotho - 新发现生物化合物数据库Biochemical Compounds Declarative Database at Washington U. W3
◎ LALIGN - 计算两个序列间的最佳排列Calculates the N-Best Local Alignments Between Two Sequences at EERIE-Nimes, France W3
◎ LFASTA - 两个序列间局部相似性L查找ocal Similarity Searches Between Two Sequences Showing Local Alignments at EERIE-Nimes, France W3
◎ LIGAND - 酶反应的配体化学数据库Ligand Chemical Database for Enzyme Reactions at GenomeNet, Japan W3
◎ LiMB - 分子生物学数据库名录Listing of Molecular Biology Databases at NIH Gopher and LiMB at EMBL-Heidelberg W3
◎ Metabolic Database - 代谢反应和途径Metabolic Reactions and Pathways at CGSC-Yale U. and Metabolic Database at INRA-Moulon, France W3
◎ MGD - 鼠基因组数据库Mouse Genome Database at Jackson Laboratory W3
◎ MHCPEP - 主要组织亲和性复合体连接多肽数据库Database of Major Histocompatibility Complex (MHC) Binding Peptides at WEHI-Melbourne, Australia Gopher
◎ MIPS-Alert - 自动序列信息查询Automated Sequence Information Queries at MIPS, Germany W3
◎ Molecules R US - PDB 文件的互动文本和图像Interactive Text and Images of PDB Files at NIH W3
◎ MPBD - 分子探针数据库Molecular Probe Data Base at EMBL-Heidelberg W3 and MPDB at U. Agricultural Sciences, Sweden Gopher
◎ MOOSE - 提取PDB中大分子信息Macromolecular Object Oriented Search Engine to Extract PDB Contained Information at Columbia U. W3
◎ MSA -多序列排列 Multiple Sequence Alignment at Washington U. W3
◎ Multiple Sequence Alignments - CLUSTAL-W, MAP, and PIMA alignments at Baylor College of Medicine W3
◎ NDB - 核酸数据库Nucleic Acid Database at Rutgers U. W3
◎ NRL_3D -PDB 序列结构数据库Sequence/Structure Database derived from PDB at Johns Hopkins and NRL_3D at EMBL-Heidelberg W3
NRSub -Bacillus subtilis的非富余结构DNA序列数据库A Non-Redundant DNA Sequence Database for Bacillus subtilis at National Institute of Genetics, Japan W3
◎ NuclPepSearch -在SwissProt中查找核酸序列 Search SwissProt for a Nucletide Sequence at ETH-Zürich, Switzerland W3
◎ OMIM - 在线人类孟德尔遗传Online Mendelian Inheritance in Man at Johns Hopkins W3
Organelle Genome -序列数据库 A Sequence Database at U. Montreal Gopher
◎ Organisms and Strains -有机体和细胞特别数据库的连接 Links to Databases Specific to Organism and Cell Collections at Biotech-Indiana W3
◎ PDB At A Glance - PDB文件的接入Hierarchic Access to PDB Files at NIH W3
◎ PDBFINDER - PDB,DSSP,HSSP信息数据库A Database Containing PDB, DSSP and HSSP Information (see Documentation) at EMBL-Heidelberg W3
◎ PepPepSearch - 检索SwissProt中的多肽序列Search SwissProt for a Peptide Sequence at ETH-Zürich, Switzerland W3
◎ Plant EST Analysis -不同植物cDNA/EST 序列相似性分析Similarity Analysis of Different Plant cDNA/EST Sequences at U. Minnesota W3
◎ Phospepsort -消化磷酸化多肽序列 Digest Phosphorylated Peptide Sequences at EERIE-Nimes, France W3 at Johns Hopkins W3
◎ PIRALN - PIR序列排列数据库Database of Sequence Alignments based on PIR at EMBL-Heidelberg W3
equence at U. Minnesota W3作者: youyou99 时间: 2014-3-26 17:40
◎ Sleuth - PDB文件中氨基酸构象和溶剂Amino Acid Conformation and Solvent Accessibility of PDB Files at Washington U. FTP
◎ STS Pipeline - 用复制检查,重复序列检索、限制性分析、载体鉴定和BLAST检索的短序列DNA分析,和STS引物选择Analysis and STS Primer Picking of Short DNA Sequences with Duplicate Checking, Sequence Repeat Finding, Restriction Analysis, Vector Identification and BLAST Searching at MIT W3
◎ Swiss-Shop -自动SwissProt和Prosite查询 Automated SwissProt and Prosite Information Queries at ExPASy, Switzerland W3
◎ TBASE - 转基因目标突变数据库Transgenic/Targeted Mutation Database at Johns Hopkins W3
◎ SWISSNEW - 新SwissProt序列New SwissProt Sequences at EBI, UK W3
Frames of GenBank Sequences at EERIE-Nimes, France W3
◎ TFD - 转录因子数据库Transcription Factor Database at NIH Gopher
◎ TFFACTOR and TFSITE - 转录因子数据Transcription Factor Data at EMBL-Heidelberg W3
◎ Tm -寡核苷酸熔点决定 Oligonucleotide Melting Point Determination at U. Minnesota W3
◎ VisAlign -氨基酸序列彩色排列图 The Alignment Color Viewer to Color 2 Aligned Amino Acid Sequences by Hydrophobicity at EBI, UK W3
◎ WebLogo - 序列标识代Sequence Logo Generation at Cambridge U., UK作者: youyou99 时间: 2014-3-26 17:55
蛋白质结构预测分析
Expasy
cuturl('http://www.expasy.ch/')
Predicting protein secondary structure
cuturl('http://dot.imgen.bcm.tmc.edu:9331/pssprediction/pssp.html')
Predicting protein 3D Structures
cuturl('http://dove.embl-heidelberg.de/3D/')
Predicting protein structures
cuturl('http://dot.imgen.bcm.tmc.edu:9331/seq-search/struc-predict.html')
其它分析工具和软件
Putative DNA Sequencing Errors Check
cuturl('http://www.bork.embl-heidelberg.de/Frame/')
MatInspector
cuturl('http://www.gsf.de/cgi-bin/matsearch.pl')
FastM
cuturl('http://www.gsf.de/cgi-bin/fastm.pl')
Web Signal Scan
cuturl('http://www.dna.affrc.go.jp/htdocs/sigscan/signal.html')
BCM Search Launcher
cuturl('http://dot.imgen.bcm.tmc.edu:9331/seq-util/seq-util.html')
Webcutter
cuturl('http://www.firstmarket.com/cutter/cut2.html')
Translate DNA to protein
cuturl('http://www.expasy.ch/tools/dna.html')
ABIM
cuturl('http://www-biol.univ-mrs.fr/english/logligne.html')
sequence motifs:
Pfam
cuturl('http://www.sanger.ac.uk/Pfam/')
cuturl('http://pfam.wustl.edu/')
ProDom
cuturl('http://protein.toulouse.inra.fr/prodom.html')
PRINTS
cuturl('http://www.biochem.ucl.ac.uk/bsm/dbbrowser/PRINTS/')
功能基因组分析
Transcription profiling technologies
cuturl('http://www.ncbi.nlm.nih.gov/ncicgap/expression_tech_info.html')
Protocols for cDNA array technology
cuturl('http://cmgm.stanford.edu/pbrown/array.html')
Data management and analysis of gene expression arrays
cuturl('http://www.nhgri.nih.gov/DIR/LCG/15k/HTML/')
Examples of commercially available filter arrays:
蛋白质数据库
蛋白质序列和相关数据库
Sequence and Structure
Antibodies
Enzyme database
BRENDA
Database of CD antigens
CD Antigens
Cytokine family database
dbCFC
Histone sequence database
Histons
Human protein reference database
HPRD
Intergrated documentation 5resources for protein families
InterPro
An integrated protein classification database
iProClass
A non-redundant protein sequence database
KIND
Database of MHC binding peptides
MHCPEP
Munich information centre for protein sequences
MIPS
Protein families database
Pfam
Annotated, and non-redundant protein sequence database
PIR
Curated database of protein sequence alignments
PIR-ALN
PIR nonredundent reference protein database
PIR-NREF
Protein mutant database
PMD
Protein research foundation
PRF
Protein Motif fingerprint database
PRINTS
Non-redundant protein database
ProClass
Protein domain database
ProDom
Hierarchical classification of swissprot proteins
ProtoMap
Restriction enzyme database
REBASE
Reference sequence database at NCBI
RefSeq
Protein signalling and extracellular domain patterns
SMART
Curated protein sequence database
SwissProt
Comprehensive protein sequence database
SPTR
Transcription factor database
Transfac
Annotated translations of EMBL nucleotide sequences
TrEMBL
WD-repeat family of proteins
WD repeats作者: shenkunjie 时间: 2014-3-26 18:11
蛋白质三维结构和相关数据库
Biological image database
BioImage
Protein structure classification
Cath
Cambridge Crystallographic Data Center
CCDC
HIV protease database 3D structure
HIV Protease
Homology-derived secondary structure of proteins database
HSSP
Database of comparative protein structure models
ModBase
3-D macromolecular structure data
PDB
Collaborative resource for structural genomics
PRESAGE
Protein structure initiative
PSI
Receptor/ligand complexes database
ReLiBase
Structure to function project
S2F
Structural Classification of Proteins
Scop
3D images of proteins and other biological macromolecules
SWISS-3DIMAGE
Automatically generated protein models database
SWISS-MODEL
Protein topology atlas作者: shenkunjie 时间: 2014-3-26 18:11
Protein topology atlas
TOPS
蛋白质结构域、基序和相关数据库
Multipe aligned segments of conserved protein regions
BLOCKS
Carbohydrate-active enzymes
CAZy
Conserved domain database and search service
CCD
Homologous protein domain families
DOMO
Database of protein domains and HMMs
Pfam
Protein domain database
ProDom
Protein motif fingerprint database
Prints
Database of protein families and domains
Prosite
SBASE domain database (Protein domain sequence library)
SBASE
Protein families based on HMMs
TIGRFAM
其 他
Signal Transduction's Web
CANSITE
Cell Signaling Networks database
CANED
Database of Interacting Proteins
DIP
DNA-Proteins interactions database
DPInteract
Protein-Protein interaction database
INTERACT
Phoretix page of links to 2D gel database
Phoretix links
Database of phosphorylation sites
Phospho Site
Protein-Protein interaction database
ProNet
Signaling pathway database
SPAD
A complete index of 2D-PAGE database and servers
WORLD-2DPAGE作者: 33号 时间: 2014-3-26 18:12
EMBO Reports 6.046
cuturl('http://embo-reports.oupjournals.org/')
European Journal of Biochemistry 2.849
cuturl('http://www.ejbiochem.org/')
Genes & Development 20.88
cuturl('http://www.genesdev.org/')
Genetics 5.167
cuturl('http://www.genetics.org/')
Genome Research 8.559
cuturl('http://www.genome.org/')
Glycobiology 3.657
cuturl('http://glycob.oupjournals.org/')
Human Molecular Genetics 9.318
cuturl('http://hmg.oupjournals.org/')
Journal of Biological Chemistry 7.258
cuturl('http://www.jbc.org/')
Journal of Cell Biology 2.244
cuturl('http://www.jcb.org/')
Journal of Cell Science 6.213
cuturl('http://www.highwire.org/more.dtl?journalcode=joces')
Journal of Clinical Investigation 2.255
cuturl('http://www.jci.org/')
Journal of Experimental Biology 2.478
cuturl('http://www.highwire.org/more.dtl?journalcode=jexbio')
Journal of Lipid Research 4.139
cuturl('http://www.jlr.org/')
Journal of Molecular Diagnostics 1.727
cuturl('http://jmd.amjpathol.org/')
Molecular and Cellular Biology 9.836
cuturl('http://mcb.asm.org/')
Molecular Biology of the Cell 7.7
cuturl('http://www.molbiolcell.org/')
Molecular Biology and Evolution 5.357
cuturl('http://www.molbiolevol.org/')作者: gmjghh 时间: 2014-3-26 18:12