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标题:【求助】稀释引物时大家用什么?

XYZQ[使用道具]
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【求助】稀释引物时大家用什么?

1\蒸馏水(如果RT-PCR就用DEPC处理过的蒸馏水)
2\Tris 缓冲液
最近听一位老师讲他认为用蒸馏水稀释的引物偏酸.
我不知道用哪种才好,为什么?
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duchy[使用道具]
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偶用1倍TE,一直都是这样,也没去追究为什么。。。惭愧。。。
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园丁##[使用道具]
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我记得发过一个贴子说过,引物应该用TE稀释。oligo在酸性条件下是不稳定的,容易降解,正如你的那位老师说的,如果用水溶解引物,无法保证pH值,如果合成引物纯化不好,造成偏酸的话,引物过一定时间就会降解而不能用了。而且,高纯水本身就偏酸,也不利于储存。所以应该按标准操作,溶解引物在1XTE里,这样可以有Buffer保证pH 7.5-8,引物才能长久保存。
如果要更长期的保存,最好是干粉。
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园丁##[使用道具]
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这是一些比较常见的保存Oligo的问题,大家可以看看。
Q1. How should the oligo be stored?
Normally, the oligo should be stable at -20°C and could be stored at that temperature for more than a year. Though it is stable in solutions it would be degraded by contamination of nucleases. Therefore, we recommend that oligo be stored as dried. If you want to store oligo in solution, it is better to divide the whole solution into several tubes and store them separately. Oligos could be decomposed due to 'Freezing and Thawing Effect' when the oligo solutions are frozen and melted repeatedly. For storage of oligodeoxyribonucleotide (DNA), pH value should not be lowered to acidic condition. In acidic condition, DNA can be decomposed by depurination. On the other hand, the phosphodiester bond of oligoribonucleotides can be broken by hydrolysis in the basic condition.
Q2. How should the oligo be resuspended?
We recommend the oligos be dissolved with a buffer like TE (10 mM Tri-HCl, 1 mM EDTA, pH 8.0) instead of sterilized water itself for longer term storage. Once resuspended, oligos should be kept frozen at -20°C for longer use. Since oligos might not be easily dissolved in sterilized water the addition of NaOH would help to dissolve oligos in water.
Q3. If oligos were left at room temperature for more than a week, do they still work?
Once dried, oligos are supposed to have a tremendous stability. Even in solution, they are reasonably stable. Therefore, for the most of cases, without the contamination of materials which can cause decomposition of oligos, they should still work well, even if they were left at room temperature for more than a week.
Q4. Do I have to treat fluorescent dye modified oligos specially in storage and handling?
If exposed to light, fluorescent dye modified oligos are more fragile than unmodified oligos and their fluorescence intensity will decrease over time. To maintain their fluorescence efficiency, fluorescent dye modified oligos should be stored in the dark at -20°C. Since Cy3 and Cy5 can be decomposed at a pH above 9, Cy3 and Cy5 modified oligos
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园丁##[使用道具]
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这里Sigma关于Oligo的指南,可以作为参考。
Oligos require certain basic storage and handling techniques in order to ensure trouble-free experiments. Proper storage of your oligo will maximize its shelf-life, allowing you to get the most use from your oligo. These simple dilution and weight/volume unit conversion guidelines will enable you to work easily with your oligo in your application.
All Genosys oligonucleotides are provided dry and ready for use upon resuspension. We recommend resuspending your oligos in a weak buffer, such as TE buffer (10 mM Tris, pH 7.5-8.0, 1 mM EDTA). Moreover, concentrated stock solutions are best kept in a weak buffer to ensure that the pH remains between 7 and 8. If TE buffer is not suitable for your application, Milli-Q™ grade water can be used. However, high grade water is usually slightly acidic and is not recommended for long term storage. DEPC-treated water may be used, but residual DEPC (diethyl pyrocarbonate) may inhibit subsequent enzymatic reactions. If desired, working solutions can be diluted from the stock solution using sterile, nuclease-free water.
Fluorescently-labeled oligonucleotides should be resuspended in TE buffer. If using fluo-rescently-modified oligonucleotides in your applications, it is important to note that the intensity of a fluorescent signal can often be impacted by the pH of the solution.Therefore, a buffered solution is recommended for resuspension for most fluorescently-labeled oligos.
For long-term storage of oligo stocks, we recommend that you aliquot, dry down the
sample and store desiccated at -20°C. Oligos modified with fluorescent dyes should be kept away from light as much as possible. Alkaline phosphatase modified oligonucleotides are shipped in 50% glycerol solution and can be stored between 4°C and -20°C, but no lower than -20°C.
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我们用得都是纯水,对引物的保存似乎也没有明显的影响。前年溶解的引物,放在-20度冰柜,到去年有近一年时间,照样用的很正常。放-4度,用一个多月也没有问题。关于稀释,好象是个习惯问题吧。可是用TE又可能影响酶的效果.......
自己摸索,怎样好就怎样做得了。
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我们实验室用四重水或者是去离子水,只要注意不要反复冻溶就行,一般保存好母液(100pmol),取一点出来(100ul)稀释为10pmol,即为工作浓度
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母液用TE,工作液用水。
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XYZQ[使用道具]
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我记得发过一个贴子说过,引物应该用TE稀释。oligo在酸性条件下是不稳定的,容易降解,正如你的那位老师说的,如果用水溶解引物,无法保证pH值,如果合成引物纯化不好,造成偏酸的话,引物过一定时间就会降解而不能用了。而且,高纯水本身就偏酸,也不利于储存。所以应该按标准操作,溶解引物在1XTE里,这样可以有Buffer保证pH 7.5-8,引物才能长久保存。
如果要更长期的保存,最好是干粉。
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wawa[使用道具]
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我是用TE稀释的,稀释为100pmol,-20度保存,用的时候再取出部分稀释到工作浓度。没用完的仍然-20度保存。
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